PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0057s00340.1
Common NameLR48_Vigan284s002600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 211aa    MW: 23716.7 Da    PI: 10.881
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0057s00340.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-114793354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      ++h+e+E+rRR riN  +e+Lr++lP++      K +Ka++L ++++ +k+L
  Vang0057s00340.1 47 KKHSEAEKRRRMRINGQYETLRTILPNL-----IKKDKASVLAETIKQVKEL 93
                      68*************************9.....5889999999999888877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.3864493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.4E-94793IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.39E-84798No hitNo description
SuperFamilySSF474592.36E-1247103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-1348104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-95099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00528137185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MQHLRSYYNS EAQMIRGGFP QPFISRTYQT SFLKQRSKTE IKVVAAKKHS EAEKRRRMRI  60
NGQYETLRTI LPNLIKKDKA SVLAETIKQV KELKKKVSKV EQESCGSSSK DVVKFPSGAD  120
RLRLEKCNNE EDLVKATLSC EDSMGLMSAI SRAMGSVKTK VVKAEIVSVG GRNRSVLWVQ  180
GLGNDHMGML KSSLKIAMHK PAFKMRRSTH *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519722.11e-144PREDICTED: transcription factor bHLH131-like
SwissprotP0CB253e-49BH131_ARATH; Transcription factor bHLH131
TrEMBLA0A0L9T7H01e-155A0A0L9T7H0_PHAAN; Uncharacterized protein
STRINGGLYMA01G02930.21e-115(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126113032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.14e-42bHLH family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]